Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015932008.1_cds_XP_016478621.1_70243
CDS Infomation

[gene=LOC107799994] [db_xref=GeneID:107799994] [protein=scarecrow-like transcription factor PAT1] [protein_id=XP_016478621.1] [location=4962..6515] [gbkey=CDS]
Sequence

ATGCAAGCATCACGACGACTCAGAAGATCATCCATGTCAAATACTCTTTACTATCAACCT
GTGCAGAAGGCAGAGGCTTACTGTCTGCCTCAGTTTCAAACTTTAGACAACCATTTGAGC
TACATTAATGGCAGCCATGGAGTTTATCACTCACCGTCAACTGCTAGTTTCTCATCAAAC
GGAAGCTCCATTTGCCATCAAGAATCTCAGCCATACCTATCAGATGTTTGCCAATCCTCT
GAGATGACTAACTACGGCTCCCCCAGTAGTGGATCTTGCATTACAGATGGTGTAAATGAT
TTCATGCACAAGTTAAAGGAATTGGAATCGGTGATGCTGGGACCTGATTCAGACTTTCTG
GAGAGTTACGATAATTCCTTGCCGAGCAGTATAGCCTCCACAGAAATTAATAGCTGGAGG
CAAATGATGGAGGCCATACCTAGACGGGATTTGAAACATGTCCTTATTGCCTGCGCAAAA
GCAGTGTCTGATGGTGATTTGCTAACAGCACAAGTGTTAATAGCTGAGTTGCGTCAAATG
GTGTCAGTGTCGGGGGAACCAATTCAGAGACTGGGAGCATACATCTTGGAAGGTCTTGTG
GCGAGGTTGGCTGCATCAGGGAGTTCCATATGCAAGTCCTTGAGATGCAAAGAACCAGCA
AGTTTTGAACTGTTATCTTATATGCACATGCTTTATGAGATTTGCCCTTATTTCAAATTC
GGATACATGTCAGCTAATGGCGCCATTGCAGAAGCAATGAAGGATGAAAATAGAGTTCAT
ATTATTGATTTCCAGATCGCTCAAGGGAGCCAGTGGGTGACTCTAATCCAAGCTTTTGCA
GCTCGGCCTGGTGGACCCCCACATATACGTGTAACAGGCATCGACGATTCCACCTCAGCT
TACGCTCGTGGAGGAGGGCTTAATATTGTGGGGCAGAGGCTGTCTAAACTCGCTAAGGCT
TTCAAGGTGCCTTTCGAGTTTCATGCTGCTGCCATTTCTGGTTCTGATGTTCAAGTTGAA
AACCTTGGAATTCAACCTGGCGAAGCACTGGCGGTAAATTTTGCTTTTACATTACATCAC
ATGCCAGATGAAAGCGTGAGCACTGAAAATCATCGGGATAGACTATTACGGATGGTCAAA
AACCTGAACCCCAAGGTGGTTACACTTGTTGAGCAAGAATCTAATACAAACACTGCTGCA
TTCTTCCCTCGATTCCTTGAAACCTTGGATTATTATACAGCCATGTTCGAGTCAATCGAT
ATGACTCTACCAAGGGGACACAAGGAGCGCATAAACGTTGAGCAGCATTGTTTAGCGAGG
GACGTTGTTAACATTATAGCATGTGAGGGGATTGAAAGAGTAGAGCGGCATGAACTTCTT
GGTAAGTGGAAGTCGCGGTTTAGAATGGCTGGTTTTAGTCCATATCCGTTGAGTTCGTTG
GTGAATGCTACAATAAAGAGATTGCTAGAAAGCTATTCTGATAAATATAGGCTTGAAGAA
AGAGATGGGGCTCTTTATCTTGGTTGGATGAATAGAGATTTGGTTGCTTNATAG

Peptide Sequence

PEP ID

XP_016478621.1
PEP Infomation

PREDICTED: scarecrow-like transcription factor PAT1 [Nicotiana tabacum]
Sequence

MQASRRLRRSSMSNTLYYQPVQKAEAYCLPQFQTLDNHLSYINGSHGVYHSPSTASFSSN
GSSICHQESQPYLSDVCQSSEMTNYGSPSSGSCITDGVNDFMHKLKELESVMLGPDSDFL
ESYDNSLPSSIASTEINSWRQMMEAIPRRDLKHVLIACAKAVSDGDLLTAQVLIAELRQM
VSVSGEPIQRLGAYILEGLVARLAASGSSICKSLRCKEPASFELLSYMHMLYEICPYFKF
GYMSANGAIAEAMKDENRVHIIDFQIAQGSQWVTLIQAFAARPGGPPHIRVTGIDDSTSA
YARGGGLNIVGQRLSKLAKAFKVPFEFHAAAISGSDVQVENLGIQPGEALAVNFAFTLHH
MPDESVSTENHRDRLLRMVKNLNPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESID
MTLPRGHKERINVEQHCLARDVVNIIACEGIERVERHELLGKWKSRFRMAGFSPYPLSSL
VNATIKRLLESYSDKYRLEERDGALYLGWMNRDLVAX

Transcript Sequence

Gene sequence data has not been registered.